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GEOPY-2714: Refactor extent property calculation for all grid objects #369

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Merged
benk-mira merged 4 commits into from
Apr 2, 2026
Merged

GEOPY-2714: Refactor extent property calculation for all grid objects #369

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bc24eaf
Remove duplicate octree_extent function. Update extent for ndarray
domfournier Mar 31, 2026
38f3042
Re-lock
domfournier Apr 1, 2026
695311f
Update return type and docstrings
domfournier Apr 1, 2026
5a89022
Only clip by 2D extent
domfournier Apr 1, 2026
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36 changes: 23 additions & 13 deletions environments/py-3.12-linux-64-dev.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,15 @@ dependencies:
- asttokens=3.0.1=pyhd8ed1ab_0
- async-lru=2.3.0=pyhcf101f3_0
- attrs=26.1.0=pyhcf101f3_0
- aws-c-auth=0.10.1=h2d2dd48_2
- aws-c-cal=0.9.13=h2c9d079_1
- aws-c-common=0.12.6=hb03c661_0
- aws-c-compression=0.3.2=h8b1a151_0
- aws-c-http=0.10.12=h4bacb7b_1
- aws-c-io=0.26.3=hc87160b_0
- aws-c-s3=0.11.5=h6d69fc9_5
- aws-c-sdkutils=0.2.4=h8b1a151_4
- aws-checksums=0.2.10=h8b1a151_0
- babel=2.18.0=pyhcf101f3_1
- backports.zstd=1.3.0=py312h90b7ffd_0
- beautifulsoup4=4.14.3=pyha770c72_0
Expand Down Expand Up @@ -61,12 +70,12 @@ dependencies:
- fonttools=4.62.0=py312h8a5da7c_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.14.3=ha770c72_0
- fsspec=2026.2.0=pyhd8ed1ab_0
- fsspec=2026.3.0=pyhd8ed1ab_0
- geoana=0.8.1=np2py312h2a48985_0
- h11=0.16.0=pyhcf101f3_1
- h2=4.3.0=pyhcf101f3_0
- h5py=3.16.0=nompi_py312ha4f8f14_100
- hdf5=1.14.6=nompi_h19486de_108
- h5py=3.16.0=nompi_py312ha829cd9_101
- hdf5=2.1.0=nompi_hd4fcb43_103
- hpack=4.1.0=pyhd8ed1ab_0
- httpcore=1.0.9=pyh29332c3_0
- httpx=0.28.1=pyhd8ed1ab_0
Expand All @@ -78,7 +87,7 @@ dependencies:
- importlib_resources=6.5.2=pyhd8ed1ab_0
- iniconfig=2.3.0=pyhd8ed1ab_0
- ipykernel=7.2.0=pyha191276_1
- ipython=9.11.0=pyhecfbec7_0
- ipython=9.12.0=pyhecfbec7_0
- ipython_genutils=0.2.0=pyhd8ed1ab_2
- ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
- ipywidgets=7.8.5=pyhd8ed1ab_0
Expand All @@ -87,7 +96,7 @@ dependencies:
- jedi=0.19.2=pyhd8ed1ab_1
- jinja2=3.1.6=pyhcf101f3_1
- joblib=1.5.3=pyhd8ed1ab_0
- json5=0.13.0=pyhd8ed1ab_0
- json5=0.14.0=pyhd8ed1ab_0
- jsonpointer=3.1.1=pyhcf101f3_0
- jsonschema=4.26.0=pyhcf101f3_0
- jsonschema-specifications=2025.9.1=pyhcf101f3_0
Expand Down Expand Up @@ -122,7 +131,7 @@ dependencies:
- libdlf=0.3.0=pyhd8ed1ab_1
- libedit=3.1.20250104=pl5321h7949ede_0
- libev=4.33=hd590300_2
- libexpat=2.7.4=hecca717_0
- libexpat=2.7.5=hecca717_0
- libffi=3.5.2=h3435931_0
- libfreetype=2.14.3=ha770c72_0
- libfreetype6=2.14.3=h73754d4_0
Expand All @@ -146,15 +155,15 @@ dependencies:
- libstdcxx=15.2.0=h934c35e_18
- libstdcxx-ng=15.2.0=hdf11a46_18
- libtiff=4.7.1=h9d88235_1
- libuuid=2.41.3=h5347b49_0
- libuuid=2.41.4=h5347b49_0
- libuv=1.51.0=hb03c661_1
- libwebp-base=1.6.0=hd42ef1d_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.15.1=h26afc86_0
- libxml2-16=2.15.1=ha9997c6_0
- libzlib=1.3.2=h25fd6f3_2
- llvm-openmp=22.1.1=h4922eb0_0
- llvm-openmp=22.1.2=h4922eb0_0
- locket=1.0.0=pyhd8ed1ab_0
- markdown-it-py=4.0.0=pyhd8ed1ab_0
- markupsafe=3.0.3=py312h8a5da7c_1
Expand Down Expand Up @@ -187,7 +196,7 @@ dependencies:
- openssl=3.6.1=h35e630c_1
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=26.0=pyhcf101f3_0
- pandas=3.0.1=py312h8ecdadd_0
- pandas=3.0.2=py312h8ecdadd_0
- pandoc=3.9.0.2=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.6=pyhcf101f3_0
Expand All @@ -207,7 +216,7 @@ dependencies:
- pydantic=2.12.5=pyhcf101f3_1
- pydantic-core=2.41.5=py312h868fb18_1
- pydiso=0.2.0=np2py312h1cfd70e_1
- pygments=2.19.2=pyhd8ed1ab_0
- pygments=2.20.0=pyhd8ed1ab_0
- pylint=4.0.5=pyhcf101f3_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.3.2=pyhcf101f3_0
Expand All @@ -228,12 +237,13 @@ dependencies:
- readline=8.3=h853b02a_0
- readthedocs-sphinx-ext=2.2.5=pyhd8ed1ab_1
- referencing=0.37.0=pyhcf101f3_0
- requests=2.33.0=pyhcf101f3_0
- requests=2.33.1=pyhcf101f3_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_1
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rfc3987-syntax=1.1.0=pyhe01879c_1
- rpds-py=0.30.0=py312h868fb18_0
- rtree=1.4.1=pyh11ca60a_0
- s2n=1.7.1=h1cbb8d7_1
- scikit-learn=1.8.0=np2py312h3226591_1
- scipy=1.17.1=py312h54fa4ab_0
- send2trash=2.1.0=pyha191276_1
Expand Down Expand Up @@ -281,7 +291,7 @@ dependencies:
- wrapt=2.1.2=py312h4c3975b_0
- xorg-libxau=1.0.12=hb03c661_1
- xorg-libxdmcp=1.1.5=hb03c661_1
- xyzservices=2025.11.0=pyhd8ed1ab_0
- xyzservices=2026.3.0=pyhd8ed1ab_0
- yaml=0.2.5=h280c20c_3
- zarr=2.14.2=pyhd8ed1ab_0
- zeromq=4.3.5=h41580af_10
Expand All @@ -292,7 +302,7 @@ dependencies:
- zstd=1.5.7=hb78ec9c_6
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@eb0474175000819e93d8dc701ed0fd6101c44451
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a4d826715e5f529242e2c7eac2805e05e1ec3027
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@f5eca3735bbca573f4cac3925c6f4c0c341d8e28
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@0e66e6b7a44ede34563da6a77ccd87a4cc7b5185
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@f7dd0d37aac285dd9ece26396ee39ae72bd6d18d

Expand Down
28 changes: 19 additions & 9 deletions environments/py-3.12-linux-64.conda.lock.yml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,15 @@ dependencies:
- _openmp_mutex=4.5=7_kmp_llvm
- annotated-types=0.7.0=pyhd8ed1ab_1
- asciitree=0.3.3=py_2
- aws-c-auth=0.10.1=h2d2dd48_2
- aws-c-cal=0.9.13=h2c9d079_1
- aws-c-common=0.12.6=hb03c661_0
- aws-c-compression=0.3.2=h8b1a151_0
- aws-c-http=0.10.12=h4bacb7b_1
- aws-c-io=0.26.3=hc87160b_0
- aws-c-s3=0.11.5=h6d69fc9_5
- aws-c-sdkutils=0.2.4=h8b1a151_4
- aws-checksums=0.2.10=h8b1a151_0
- backports.zstd=1.3.0=py312h90b7ffd_0
- bokeh=3.6.3=pyhd8ed1ab_0
- brotli=1.2.0=hed03a55_1
Expand All @@ -32,11 +41,11 @@ dependencies:
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.62.0=py312h8a5da7c_0
- freetype=2.14.3=ha770c72_0
- fsspec=2026.2.0=pyhd8ed1ab_0
- fsspec=2026.3.0=pyhd8ed1ab_0
- geoana=0.8.1=np2py312h2a48985_0
- h2=4.3.0=pyhcf101f3_0
- h5py=3.16.0=nompi_py312ha4f8f14_100
- hdf5=1.14.6=nompi_h19486de_108
- h5py=3.16.0=nompi_py312ha829cd9_101
- hdf5=2.1.0=nompi_hd4fcb43_103
- hpack=4.1.0=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he02047a_0
Expand All @@ -60,7 +69,7 @@ dependencies:
- libdlf=0.3.0=pyhd8ed1ab_1
- libedit=3.1.20250104=pl5321h7949ede_0
- libev=4.33=hd590300_2
- libexpat=2.7.4=hecca717_0
- libexpat=2.7.5=hecca717_0
- libffi=3.5.2=h3435931_0
- libfreetype=2.14.3=ha770c72_0
- libfreetype6=2.14.3=h73754d4_0
Expand All @@ -83,14 +92,14 @@ dependencies:
- libstdcxx=15.2.0=h934c35e_18
- libstdcxx-ng=15.2.0=hdf11a46_18
- libtiff=4.7.1=h9d88235_1
- libuuid=2.41.3=h5347b49_0
- libuuid=2.41.4=h5347b49_0
- libwebp-base=1.6.0=hd42ef1d_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.15.1=h26afc86_0
- libxml2-16=2.15.1=ha9997c6_0
- libzlib=1.3.2=h25fd6f3_2
- llvm-openmp=22.1.1=h4922eb0_0
- llvm-openmp=22.1.2=h4922eb0_0
- locket=1.0.0=pyhd8ed1ab_0
- markupsafe=3.0.3=py312h8a5da7c_1
- matplotlib-base=3.10.8=py312he3d6523_0
Expand All @@ -107,7 +116,7 @@ dependencies:
- openpyxl=3.1.5=py312h7f6eeab_3
- openssl=3.6.1=h35e630c_1
- packaging=26.0=pyhcf101f3_0
- pandas=3.0.1=py312h8ecdadd_0
- pandas=3.0.2=py312h8ecdadd_0
- partd=1.4.2=pyhd8ed1ab_0
- pillow=12.1.1=py312h50c33e8_0
- pip=26.0.1=pyh8b19718_0
Expand All @@ -128,6 +137,7 @@ dependencies:
- qhull=2020.2=h434a139_5
- readline=8.3=h853b02a_0
- rtree=1.4.1=pyh11ca60a_0
- s2n=1.7.1=h1cbb8d7_1
- scikit-learn=1.8.0=np2py312h3226591_1
- scipy=1.17.1=py312h54fa4ab_0
- setuptools=82.0.1=pyh332efcf_0
Expand All @@ -151,7 +161,7 @@ dependencies:
- wrapt=2.1.2=py312h4c3975b_0
- xorg-libxau=1.0.12=hb03c661_1
- xorg-libxdmcp=1.1.5=hb03c661_1
- xyzservices=2025.11.0=pyhd8ed1ab_0
- xyzservices=2026.3.0=pyhd8ed1ab_0
- yaml=0.2.5=h280c20c_3
- zarr=2.14.2=pyhd8ed1ab_0
- zict=3.0.0=pyhd8ed1ab_1
Expand All @@ -160,7 +170,7 @@ dependencies:
- zstd=1.5.7=hb78ec9c_6
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@eb0474175000819e93d8dc701ed0fd6101c44451
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a4d826715e5f529242e2c7eac2805e05e1ec3027
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@f5eca3735bbca573f4cac3925c6f4c0c341d8e28
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@0e66e6b7a44ede34563da6a77ccd87a4cc7b5185
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@f7dd0d37aac285dd9ece26396ee39ae72bd6d18d

Expand Down
33 changes: 21 additions & 12 deletions environments/py-3.12-win-64-dev.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,15 @@ dependencies:
- asttokens=3.0.1=pyhd8ed1ab_0
- async-lru=2.3.0=pyhcf101f3_0
- attrs=26.1.0=pyhcf101f3_0
- aws-c-auth=0.10.1=h5d51246_2
- aws-c-cal=0.9.13=h46f3b43_1
- aws-c-common=0.12.6=hfd05255_0
- aws-c-compression=0.3.2=hcb3a2da_0
- aws-c-http=0.10.12=h612f3e8_1
- aws-c-io=0.26.3=h0d5b9f9_0
- aws-c-s3=0.11.5=h87bd87b_5
- aws-c-sdkutils=0.2.4=hcb3a2da_4
- aws-checksums=0.2.10=hcb3a2da_0
- babel=2.18.0=pyhcf101f3_1
- backports.zstd=1.3.0=py312h06d0912_0
- beautifulsoup4=4.14.3=pyha770c72_0
Expand Down Expand Up @@ -60,12 +69,12 @@ dependencies:
- fonttools=4.62.0=py312h05f76fc_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.14.3=h57928b3_0
- fsspec=2026.2.0=pyhd8ed1ab_0
- fsspec=2026.3.0=pyhd8ed1ab_0
- geoana=0.8.1=np2py312h7c90ba1_0
- h11=0.16.0=pyhcf101f3_1
- h2=4.3.0=pyhcf101f3_0
- h5py=3.16.0=nompi_py312h03cd2ba_100
- hdf5=1.14.6=nompi_hae35d4c_108
- h5py=3.16.0=nompi_py312h5ddec8c_101
- hdf5=2.1.0=nompi_hd96b29f_103
- hpack=4.1.0=pyhd8ed1ab_0
- httpcore=1.0.9=pyh29332c3_0
- httpx=0.28.1=pyhd8ed1ab_0
Expand All @@ -76,7 +85,7 @@ dependencies:
- importlib_resources=6.5.2=pyhd8ed1ab_0
- iniconfig=2.3.0=pyhd8ed1ab_0
- ipykernel=7.2.0=pyh6dadd2b_1
- ipython=9.11.0=pyhccfa634_0
- ipython=9.12.0=pyhccfa634_0
- ipython_genutils=0.2.0=pyhd8ed1ab_2
- ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
- ipywidgets=7.8.5=pyhd8ed1ab_0
Expand All @@ -85,7 +94,7 @@ dependencies:
- jedi=0.19.2=pyhd8ed1ab_1
- jinja2=3.1.6=pyhcf101f3_1
- joblib=1.5.3=pyhd8ed1ab_0
- json5=0.13.0=pyhd8ed1ab_0
- json5=0.14.0=pyhd8ed1ab_0
- jsonpointer=3.1.1=pyhcf101f3_0
- jsonschema=4.26.0=pyhcf101f3_0
- jsonschema-specifications=2025.9.1=pyhcf101f3_0
Expand Down Expand Up @@ -116,7 +125,7 @@ dependencies:
- libcurl=8.19.0=h8206538_0
- libdeflate=1.25=h51727cc_0
- libdlf=0.3.0=pyhd8ed1ab_1
- libexpat=2.7.4=hac47afa_0
- libexpat=2.7.5=hac47afa_0
- libffi=3.5.2=h3d046cb_0
- libfreetype=2.14.3=h57928b3_0
- libfreetype6=2.14.3=hdbac1cb_0
Expand All @@ -139,7 +148,7 @@ dependencies:
- libxml2=2.15.2=h5d26750_0
- libxml2-16=2.15.2=h692994f_0
- libzlib=1.3.2=hfd05255_2
- llvm-openmp=22.1.1=h4fa8253_0
- llvm-openmp=22.1.2=h4fa8253_0
- locket=1.0.0=pyhd8ed1ab_0
- markdown-it-py=4.0.0=pyhd8ed1ab_0
- markupsafe=3.0.3=py312h05f76fc_1
Expand Down Expand Up @@ -169,7 +178,7 @@ dependencies:
- openssl=3.6.1=hf411b9b_1
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=26.0=pyhcf101f3_0
- pandas=3.0.1=py312h95189c4_0
- pandas=3.0.2=py312h95189c4_0
- pandoc=3.9.0.2=h57928b3_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.6=pyhcf101f3_0
Expand All @@ -187,7 +196,7 @@ dependencies:
- pydantic=2.12.5=pyhcf101f3_1
- pydantic-core=2.41.5=py312hdabe01f_1
- pydiso=0.2.0=np2py312hd8dafd6_1
- pygments=2.19.2=pyhd8ed1ab_0
- pygments=2.20.0=pyhd8ed1ab_0
- pylint=4.0.5=pyhcf101f3_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.3.2=pyhcf101f3_0
Expand All @@ -209,7 +218,7 @@ dependencies:
- qhull=2020.2=hc790b64_5
- readthedocs-sphinx-ext=2.2.5=pyhd8ed1ab_1
- referencing=0.37.0=pyhcf101f3_0
- requests=2.33.0=pyhcf101f3_0
- requests=2.33.1=pyhcf101f3_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_1
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rfc3987-syntax=1.1.0=pyhe01879c_1
Expand Down Expand Up @@ -268,7 +277,7 @@ dependencies:
- wrapt=2.1.2=py312he06e257_0
- xorg-libxau=1.0.12=hba3369d_1
- xorg-libxdmcp=1.1.5=hba3369d_1
- xyzservices=2025.11.0=pyhd8ed1ab_0
- xyzservices=2026.3.0=pyhd8ed1ab_0
- yaml=0.2.5=h6a83c73_3
- zarr=2.14.2=pyhd8ed1ab_0
- zeromq=4.3.5=h507cc87_10
Expand All @@ -278,7 +287,7 @@ dependencies:
- zstd=1.5.7=h534d264_6
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@eb0474175000819e93d8dc701ed0fd6101c44451
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a4d826715e5f529242e2c7eac2805e05e1ec3027
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@f5eca3735bbca573f4cac3925c6f4c0c341d8e28
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@0e66e6b7a44ede34563da6a77ccd87a4cc7b5185
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@f7dd0d37aac285dd9ece26396ee39ae72bd6d18d

Expand Down
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