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A Python pipeline combining family-specific transposable element detection methods into a single user-friendly toolbox. Outperforms RepeatModeler on classification breadth and TE family diversity in plant genomes. Published in BMC Bioinformatics (2023)
Comparative analysis of next-generation sequencing and genome assembly strategies in Pleurodeles waltl and related vertebrate genomes — MSc Bioinformatics NGS coursework