Access to Biological Web Services from Python.

Schema for chemistry ontology classes

LLM-generated CHEBI classifiers

Always hungry SDF chemical file format parser with many output formats

CHEBI Integrated Role Ontology

metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.

Python tools for ChEBI database: subgraph extraction and molecular entity standardization for metabolomics

Access online services of chemical identifiers from Python

A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL

Systematic expansion of R-group for ChEBI molecules from the RHEA database

Calls BioPortal API to look for matches in ChEBI to DrOn ingredient terms derived from RxNorm

Data Manipulation and neo4j imports for Analysis

Classify, cluster, and extract data using structured LLM outputs with validated models, consensus voting, and multithreading for efficient batch processing.

Search genomes by chemical compounds