Changing how CXXFLAGS is configured#88

Merged

andrewdavidsmith merged 11 commits intomasterfrom

changing-where-CXXFLAGS-is-set

Mar 5, 2026

Commits on Mar 4, 2026

src/HtmlMaker.cpp: getting version from config.h and using regex to replace strings in the html template
andrewdavidsmith
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src/HtmlMaker.hpp: putting constructor definition in the header with declaration
andrewdavidsmith
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src/HtmlMaker.hpp: added forgotten const
andrewdavidsmith
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Makefile and src/Makefile: removing these and requiring Makefiles to come from automake
andrewdavidsmith
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configure.ac: removing the OPENMP stuff as it seems not used
andrewdavidsmith
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Makefile.am: attempting to simplify
andrewdavidsmith
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src/smithlab_utils.hpp: trying to speedup the kmer_counts function
andrewdavidsmith
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