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1. KMC KMC Public

   Fast and frugal disk based k-mer counter

   C++ 326 83

2. FAMSA FAMSA Public

   Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

   C++ 222 31

3. colord colord Public

   A versatile compressor of third generation sequencing reads.

   C++ 52 14

4. kmer-db kmer-db Public

   Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

   C++ 97 18

5. agc agc Public

   Assembled Genomes Compressor

   C++ 178 15

6. PHIST PHIST Public

   Phage-Host Interaction Search Tool

   C++ 29 3