Skip to content
@rat-genome-database

Rat Genome Database

Pinned Loading

  1. rgd-core-library rgd-core-library Public

    Domain layer and shared components

    Java

  2. rgd-web-application rgd-web-application Public

    Code used by the RGD web site and tools

    JavaScript 2

  3. rgd-web-services rgd-web-services Public

    Swagger implementation

    Java

  4. rgd-annotation-files rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

Repositories

Showing 10 of 153 repositories
  • gff3-pipeline Public

    Creates gff3 files to be loaded into RGD JBrowse instance.

    rat-genome-database/gff3-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 27, 2026
  • rgd-core-library Public

    Domain layer and shared components

    rat-genome-database/rgd-core-library’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 27, 2026
  • rgd-web-application Public

    Code used by the RGD web site and tools

    rat-genome-database/rgd-web-application’s past year of commit activity
    JavaScript 2 GPL-3.0 0 0 2 Updated Feb 26, 2026
  • elastic-search-indexer-pipeline Public

    Pipeline to create elastic search indexes.

    rat-genome-database/elastic-search-indexer-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 26, 2026
  • expression-tpm-pipeline Public

    load the TPM data being generated for GEO expression samples

    rat-genome-database/expression-tpm-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 26, 2026
  • goc-annotation-pipeline Public

    Generate GO annotation files in GAF format

    rat-genome-database/goc-annotation-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 24, 2026
  • text-mining-tools Public
    rat-genome-database/text-mining-tools’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 23, 2026
  • rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

    rat-genome-database/rgd-annotation-files’s past year of commit activity
    0 GPL-3.0 0 1 0 Updated Feb 21, 2026
  • omia-pipeline Public

    Create annotations from OMIA

    rat-genome-database/omia-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 20, 2026
  • ncbi-gene-pipeline Public

    Load nucleotide and protein sequences for genes, all species, from NCBI.

    rat-genome-database/ncbi-gene-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Feb 20, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…