Repositories list

• tilia_api

  Public
  A repository for the implementation of the Tilia/uploader API

  JavaScript

  •

  MIT License

  •1•0•9•8•Updated Mar 6, 2026Mar 6, 2026

• DataBUS

  Public
  The Neotoma Paleoecology Database Data Bulk Uploader System

  Python

  •

  MIT License

  •3•0•0•0•Updated Mar 5, 2026Mar 5, 2026

• neotoma2faire

  Public
  A repository to convert Neotoma project and dataset data to FAIRe standards.

  Python

  •

  Other

  •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

• Neotoma_SQL

  Public
  Repository for functions associated with Neotoma's Postgres DB

  postgressqlneotoma+ 1

  postgressqlneotomapaleoecology

  Python

  •

  MIT License

  •0•1•3•1•Updated Feb 25, 2026Feb 25, 2026

• neotomapydoi

  Public
  A repository for managing Neotoma DataCite DOIs using Python.

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

• api_dockers

  Public
  A repository for docker containers that can be used to run a local version of the Neotoma infrastructure.

  Dockerfile

  •

  MIT License

  •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

• clean_backup

  Public
  A repository to generate automated backups for the Neotoma PostgreSQL database using AWS infrastructure

  bashdockerfilepostgresql+ 8

  bashdockerfilepostgresqlaws-cliaws-ecrneotomansfaws-batchpaleoecologyneotoma-database+ 1

  Shell

  •

  MIT License

  •0•1•1•0•Updated Feb 24, 2026Feb 24, 2026

• neotomadb.github.io

  Public
  Neotoma website on github.

  HTML

  •

  MIT License

  •0•1•1•0•Updated Feb 20, 2026Feb 20, 2026

• DataBUS_Ostracode

  Public archive
  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 17, 2026Feb 17, 2026

• neotoma_database_functions

  Public
  A repository for managing database functions for the Neotoma Database.

  PLpgSQL

  •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

• periodic_updates

  Public
  A project to help support the periodic update and revision of data within Neotoma that comes from external sources.

  Python

  •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

• api_nodetest

  Public
  node.js and express implementation for the Neotoma API

  nodejsapiexpress+ 5

  nodejsapiexpressswaggerneotomapaleoecologyneotoma-databaseneotoma-api

  JavaScript

  •

  MIT License

  •1•2•33•0•Updated Jan 27, 2026Jan 27, 2026

• ndbLandingPage

  Public
  A repository for DOI landing pages using Vue.js as the front-end.

  vuejsdoineotoma

  vuejsdoineotoma

  Vue

  •

  MIT License

  •3•1•1•1•Updated Jan 27, 2026Jan 27, 2026

• Workshops

  Public
  This repository is a location for storing and developing workshops materials.

  HTML

  •

  MIT License

  •4•2•3•1•Updated Jan 27, 2026Jan 27, 2026

• DataBUS_SISAL

  Public archive
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

• system_documentation

  Public
  A repository to manage Neotoma's complete system documentation.

  Python

  •0•1•0•0•Updated Jan 15, 2026Jan 15, 2026

• neotoma2

  Public
  Repository for the updated neotoma R package.

  rrstatsneotoma+ 3

  rrstatsneotomansfpaleoecologyearthcube

  R

  •

  Other

  •12•9•5•0•Updated Dec 14, 2025Dec 14, 2025

• DataBUS_Pb210

  Public archive
  Lead210 DataBUS push.

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• landingpagev3

  Public
  A repository for the updated (Vue3) Neotoma Landing Pages

  CSS

  •

  MIT License

  •0•0•1•4•Updated Dec 1, 2025Dec 1, 2025

• Workshops_Sisal

  Public
  HTML

  •

  MIT License

  •1•0•0•0•Updated Nov 26, 2025Nov 26, 2025

• ndbduplicates

  Public
  A small script and package to manage checking and fixing duplicate records in the Neotoma Database.

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• landingPages

  Public
  A repository specifically for generating RMarkdown landing pages for Neotoma Datasets

  metadatardatabase+ 4

  metadatardatabaselanding-pagermarkdownschema-orgneotoma-database

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

• Explorer

  Public
  Neotoma Explorer - issue tracker and code repository

  JavaScript

  •

  MIT License

  •0•2•22•0•Updated Jul 28, 2025Jul 28, 2025

• Current_Workshop

  Public
  Current Workshops for Neotoma

  HTML

  •

  MIT License

  •4•3•1•2•Updated Jun 25, 2025Jun 25, 2025

• repo_best_practices

  Public
  A repo that describes the recommended practices for setting up new repositories within the Neotoma Paleoecology Database.

  best-practicesneotomadb

  best-practicesneotomadb

  MIT License

  •0•0•1•0•Updated May 22, 2025May 22, 2025

• taxoninsertion

  Public
  A package to bulk upload taxonomic data (beetles in this case) from Family/genus/species info.

  Python

  •

  MIT License

  •0•0•0•0•Updated May 21, 2025May 21, 2025

• NeotomaSummary

  Public
  A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.

  sqlrmarkdownneotoma-database

  sqlrmarkdownneotoma-database

  HTML

  •

  Other

  •1•0•0•0•Updated May 15, 2025May 15, 2025

• neotoma_doi

  Public archive
  Managing DOIs with a postgres database and the DataCite API.

  R

  •

  MIT License

  •0•1•5•0•Updated May 12, 2025May 12, 2025

• R-workshop

  Public
  Developed R-workshop with webr-r and Quarto documents. Maintaining the binder at CurrentWorkshop for now.

  Python

  •

  MIT License

  •0•0•0•0•Updated May 9, 2025May 9, 2025

• StateofDB_DockerCompose

  Public
  Building the State of the DB from 2 Docker containers: one for Postgres, one for RStudio

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025