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@klamt-lab

Steffen Klamt's Lab at the Max Planck Institute Magdeburg

Software developed by members of the ARB group headed by Steffen Klamt at the Max Planck Institute Magdeburg

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  1. straindesign straindesign Public

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    Python 50 7

  2. autopacmen autopacmen Public

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also check out its spiritual successor, COBRA-k: https://github.com/k…

    HTML 17 8

  3. Kinetic-models-of-E.-coli Kinetic-models-of-E.-coli Public

    Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

    3

  4. CommModelPy CommModelPy Public

    Create stoichiometric metabolic network models of single-species or multi-species communities

    Python 3

  5. MEMO MEMO Public

    Models and scripts for the MEMO paper

    MATLAB 1

  6. astheriscPackage astheriscPackage Public

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    MATLAB

Repositories

Showing 10 of 20 repositories
  • straindesign Public

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    klamt-lab/straindesign’s past year of commit activity
    Python 50 Apache-2.0 7 6 0 Updated Mar 23, 2026
  • MoRSel_UDP-GalNAc_Paper Public

    Data repository of the work published in Huber et al. 2026.

    klamt-lab/MoRSel_UDP-GalNAc_Paper’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • COBRA-k Public

    A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:

    klamt-lab/COBRA-k’s past year of commit activity
    Python 14 Apache-2.0 4 0 0 Updated Mar 6, 2026
  • Modeling_Awoodii Public
    klamt-lab/Modeling_Awoodii’s past year of commit activity
    HTML 2 Apache-2.0 0 0 0 Updated Feb 18, 2026
  • autopacmen Public

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also check out its spiritual successor, COBRA-k: https://github.com/klamt-lab/COBRA-k

    klamt-lab/autopacmen’s past year of commit activity
    HTML 17 Apache-2.0 8 5 0 Updated Feb 28, 2025
  • TCOSA Public

    Thermodynamic Cofactor Swapping Analysis

    klamt-lab/TCOSA’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Jan 24, 2025
  • GDP-Fucose_OptMet2023_Paper Public

    Contains all relevant data of the 2023 GDP-Fucose paper.

    klamt-lab/GDP-Fucose_OptMet2023_Paper’s past year of commit activity
    Component Pascal 3 Apache-2.0 0 0 0 Updated Jun 28, 2024
  • OptMSP Public
    klamt-lab/OptMSP’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 0 0 0 Updated Jan 17, 2024
  • CNApy Public

    The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here: https://github.com/cnapy-org/CNApy

    klamt-lab/CNApy’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated Jul 15, 2022
  • astheriscPackage Public

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    klamt-lab/astheriscPackage’s past year of commit activity
    MATLAB 0 Apache-2.0 0 0 0 Updated Jun 1, 2022
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