NGS Data Analysis Course

Introduction to Linux systems

Introduction to NGS technologies

Quality control for NGS raw data

• Slides - Practical exercise 1: fastQC - Practical exercise 2: cutadapt

Mapping reads to a reference genome

Visualization of NGS data

• Slides || Practical exercise 1 || Practical exercise 2

Variant calling

Variant annotation

Association studies

RNA-Seq data processing

RNA-Seq data analysis

Functional analysis