AnnotationMayo

A Streamlit-based tool for cell segmentation annotation.

Dependency

Make sure you have Streamlit installed. You can install it using pip:

pip install streamlit

How to Run

Step 1: Replace the folder path in your annotation.py file to point to your images:

# ---------------- CONFIG ----------------
IMAGE_FOLDER = '/home/your_username/path_to_your_images_folder'
# ----------------------------------------

Step 2: Launch the annotation tool using the following command:

streamlit run annotation.py

Port Configuration

Make sure the default Streamlit port (8501) is open in your firewall settings (feel free to change the port number as needed):

sudo ufw status
sudo ufw allow 8501   # Replace 8501 with your desired port if different
sudo ufw reload