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Fix outdated cBioPortal API endpoint causing HTTP 302 in intro notebook #5

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Fix outdated cBioPortal API endpoint causing HTTP 302 in intro notebook #5

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e131af5
Fix outdated cBioPortal API endpoint in intro notebook (resolve HTTP …
sahithiroy Feb 24, 2026
7c0463e
to resolve the incomplete function call that raises `_IncompleteInput…
sahithiroy Feb 24, 2026
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49 changes: 39 additions & 10 deletions python/intro/intro.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -92,6 +92,24 @@
"For example this is how to connect to the [cBioPortal](https://www.cbioportal.org) API:"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"c:\\codebook\\cbio_env\\Scripts\\python.exe\n"
]
}
],
"source": [
"import sys\n",
"print(sys.executable)"
]
},
{
"cell_type": "code",
"execution_count": 1,
Expand Down Expand Up @@ -124,11 +142,22 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 2,
"metadata": {},
"outputs": [],
"outputs": [
{
"data": {
"text/plain": [
"SwaggerClient(https://www.cbioportal.org/api)"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"cbioportal."
"cbioportal"
]
},
{
Expand All @@ -142,22 +171,22 @@
},
{
"cell_type": "code",
"execution_count": 19,
"execution_count": 4,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"<bravado.http_future.HttpFuture at 0x1180fc6a0>"
"<bravado.http_future.HttpFuture at 0x21b07a33b10>"
]
},
"execution_count": 19,
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"cbioportal.Cancer_Types.getAllCancerTypesUsingGET("
"cbioportal.Cancer_Types.getAllCancerTypesUsingGET()"
]
},
{
Expand All @@ -169,7 +198,7 @@
},
{
"cell_type": "code",
"execution_count": 8,
"execution_count": 5,
"metadata": {},
"outputs": [
{
Expand Down Expand Up @@ -2117,7 +2146,7 @@
],
"metadata": {
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"display_name": "cbio_env311",
"language": "python",
"name": "python3"
},
Expand All @@ -2131,7 +2160,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.3"
"version": "3.13.2"
}
},
"nbformat": 4,
Expand Down