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[SYNPY-1788] Comment out test due to synapse api error #1338

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Merged
linglp merged 11 commits into from
Mar 19, 2026
Merged

[SYNPY-1788] Comment out test due to synapse api error #1338

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69121de
comment out test due to synapse api error
Mar 13, 2026
dab25c8
comment out test due to synapse api error
Mar 13, 2026
f08d6c8
clean up
Mar 16, 2026
5390859
use asyncio fixture
Mar 16, 2026
5c12eca
try always create a test report
Mar 17, 2026
094e738
add installation
Mar 17, 2026
fd56cd8
try updating the timeout to 60
Mar 17, 2026
bad2ec4
keep artifacts; remove summary
Mar 18, 2026
455c089
ignore open-telemetry warning
Mar 18, 2026
69279dc
fix syntax
Mar 18, 2026
ab2322d
remove double end and changes to pytest.ini
Mar 18, 2026
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17 changes: 15 additions & 2 deletions .github/workflows/build.yml
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -84,7 +84,7 @@ jobs:
path: |
${{ steps.get-dependencies.outputs.site_packages_loc }}
${{ steps.get-dependencies.outputs.site_bin_dir }}
key: ${{ runner.os }}-${{ matrix.python }}-build-${{ env.cache-name }}-${{ hashFiles('setup.py') }}-v32
key: ${{ runner.os }}-${{ matrix.python }}-build-${{ env.cache-name }}-${{ hashFiles('setup.py', 'setup.cfg') }}-v33

- name: Install py-dependencies
if: steps.cache-dependencies.outputs.cache-hit != 'true'
Expand Down Expand Up @@ -209,6 +209,7 @@ jobs:

# Run only the failed tests
pytest -sv --reruns 3 --cov-append --cov=. --cov-report xml \
--html=integration-test-report.html --self-contained-html \
--junit-xml=test-results.xml \
-n 8 --dist loadscope \
$(cat failed_tests.txt | tr '\n' ' ')
Expand All @@ -217,12 +218,13 @@ jobs:

# use loadscope to avoid issues running tests concurrently that share scoped fixtures
pytest -sv --reruns 3 --cov-append --cov=. --cov-report xml \
--html=integration-test-report.html --self-contained-html \
--junit-xml=test-results.xml \
tests/integration -n 8 $IGNORE_FLAGS --dist loadscope
fi

# Execute the CLI tests in a non-dist way because they were causing some test instability when being run concurrently
pytest -sv --reruns 3 --cov-append --cov=. --cov-report xml tests/integration/synapseclient/test_command_line_client.py
pytest -sv --reruns 3 --cov-append --cov=. --cov-report xml --html=cli-test-report.html --self-contained-html tests/integration/synapseclient/test_command_line_client.py

- name: Extract Failed Tests
if: always() && steps.integration_tests.outcome == 'failure'
Expand Down Expand Up @@ -292,6 +294,17 @@ jobs:
echo "::error::Integration tests failed after ${{ github.run_attempt }} attempt(s)"
exit 1

- name: Upload integration test HTML report
# make sure report always gets uploaded if the integration tests ran, even if they failed, but skip if the integration tests were skipped
if: always() && steps.integration_tests.outcome != 'skipped'
uses: actions/upload-artifact@v4
with:
name: integration-test-report-${{ matrix.os }}-${{ matrix.python }}
path: |
integration-test-report.html
cli-test-report.html
retention-days: 14

- name: Upload coverage report
id: upload_coverage_report
uses: actions/upload-artifact@v4
Expand Down
3 changes: 3 additions & 0 deletions setup.cfg
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Original file line number Diff line number Diff line change
Expand Up @@ -72,6 +72,7 @@ tests_require =
pytest-rerunfailures~=12.0
func-timeout~=4.3
pytest-cov~=4.1.0
pytest-html~=4.1.0
pandas>=1.5,<3.0

[options.extras_require]
Expand All @@ -85,6 +86,7 @@ dev =
pytest-rerunfailures~=12.0
func-timeout~=4.3
pytest-cov~=4.1.0
pytest-html~=4.1.0
black
pre-commit
filelock>=3.20.3
Expand All @@ -100,6 +102,7 @@ tests =
pytest-rerunfailures~=12.0
func-timeout~=4.3
pytest-cov~=4.1.0
pytest-html~=4.1.0
pandas>=1.5,<3.0
jsonschema>=4.23.0

Expand Down
1 change: 0 additions & 1 deletion tests/integration/conftest.py
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Original file line number Diff line number Diff line change
Expand Up @@ -238,4 +238,3 @@ def wrap_with_otel(request):
finally:
for processor in active_span_processors:
processor.force_flush()
span.end()
4 changes: 2 additions & 2 deletions tests/integration/synapseclient/models/async/test_json_schema_async.py
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Original file line number Diff line number Diff line change
Expand Up @@ -309,7 +309,7 @@ async def _get_derived_keys():

response = await wait_for_condition(
_get_derived_keys,
timeout_seconds=30,
timeout_seconds=60,
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Contributor Author

@linglp linglp Mar 18, 2026

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Update time out to 60 seconds because of errors:

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_get_schema_derived_keys_async[Folder] - TimeoutError: Timed out waiting for schema derived keys to be populated after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_get_schema_derived_keys_async[Project] - TimeoutError: Timed out waiting for schema derived keys to be populated after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_get_schema_derived_keys_async[File] - TimeoutError: Timed out waiting for schema derived keys to be populated after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_get_schema_derived_keys_async[EntityView] - TimeoutError: Timed out waiting for schema derived keys to be populated after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_get_schema_derived_keys_async[Table] - TimeoutError: Timed out waiting for schema derived keys to be populated after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_validate_schema_async_invalid_annos[Folder] - TimeoutError: Timed out waiting for schema validation results (invalid) to be available after 30s

FAILED tests/integration/synapseclient/models/async/test_json_schema_async.py::TestJSONSchema::test_validate_schema_async_invalid_annos[Project] - TimeoutError: Timed out waiting for schema validation results (invalid) to be available after 30s

poll_interval_seconds=2,
description="schema derived keys to be populated",
)
Expand Down Expand Up @@ -373,7 +373,7 @@ async def _validate_invalid():

response = await wait_for_condition(
_validate_invalid,
timeout_seconds=30,
timeout_seconds=60,
poll_interval_seconds=2,
description="schema validation results (invalid) to be available",
)
Expand Down
43 changes: 22 additions & 21 deletions tests/integration/synapseclient/models/async/test_recordset_async.py
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Original file line number Diff line number Diff line change
Expand Up @@ -637,9 +637,10 @@ async def test_get_validation_results_with_default_location_async(
"expected type: String, found: Null"
in results_df.loc[2, "validation_error_message"]
), f"Row 2 should have null type error, got: {results_df.loc[2, 'validation_error_message']}"
assert "#/name: expected type: String, found: Null" in str(
results_df.loc[2, "all_validation_messages"]
), f"Row 2 all_validation_messages incorrect: {results_df.loc[2, 'all_validation_messages']}"
##TODO: uncomment the test after PLFM-9532 is resolved
# assert "#/name: expected type: String, found: Null" in str(
# results_df.loc[2, "all_validation_messages"]
# ), f"Row 2 all_validation_messages incorrect: {results_df.loc[2, 'all_validation_messages']}"

# AND row 3 should be invalid (multiple violations: minLength, maximum, enum)
assert (
Expand All @@ -648,18 +649,18 @@ async def test_get_validation_results_with_default_location_async(
assert (
"3 schema violations found" in results_df.loc[3, "validation_error_message"]
), f"Row 3 should have 3 violations, got: {results_df.loc[3, 'validation_error_message']}"
all_msgs_3 = str(results_df.loc[3, "all_validation_messages"])
assert (
"#/name: expected minLength: 3, actual: 2" in all_msgs_3
), f"Row 3 should have minLength violation: {all_msgs_3}"
assert (
"#/value: 1500 is not less or equal to 1000" in all_msgs_3
or "1500" in all_msgs_3
), f"Row 3 should have maximum violation: {all_msgs_3}"
assert (
"#/category: X is not a valid enum value" in all_msgs_3
or "enum" in all_msgs_3.lower()
), f"Row 3 should have enum violation: {all_msgs_3}"
# all_msgs_3 = str(results_df.loc[3, "all_validation_messages"])
# assert (
# "#/name: expected minLength: 3, actual: 2" in all_msgs_3
# ), f"Row 3 should have minLength violation: {all_msgs_3}"
# assert (
# "#/value: 1500 is not less or equal to 1000" in all_msgs_3
# or "1500" in all_msgs_3
# ), f"Row 3 should have maximum violation: {all_msgs_3}"
# assert (
# "#/category: X is not a valid enum value" in all_msgs_3
# or "enum" in all_msgs_3.lower()
# ), f"Row 3 should have enum violation: {all_msgs_3}"

# AND row 4 should be invalid (value below minimum)
assert (
Expand All @@ -669,9 +670,9 @@ async def test_get_validation_results_with_default_location_async(
"-50.0 is not greater or equal to 0"
in results_df.loc[4, "validation_error_message"]
), f"Row 4 should have minimum violation, got: {results_df.loc[4, 'validation_error_message']}"
assert "#/value: -50.0 is not greater or equal to 0" in str(
results_df.loc[4, "all_validation_messages"]
), f"Row 4 all_validation_messages incorrect: {results_df.loc[4, 'all_validation_messages']}"
# assert "#/value: -50.0 is not greater or equal to 0" in str(
# results_df.loc[4, "all_validation_messages"]
# ), f"Row 4 all_validation_messages incorrect: {results_df.loc[4, 'all_validation_messages']}"

async def test_get_validation_results_with_custom_location_async(
self, record_set_with_validation_fixture: RecordSet
Expand Down Expand Up @@ -719,9 +720,9 @@ async def test_get_validation_results_with_custom_location_async(
assert pd.notna(
row["validation_error_message"]
), f"Row {idx} is marked invalid but has no validation_error_message"
assert pd.notna(
row["all_validation_messages"]
), f"Row {idx} is marked invalid but has no all_validation_messages"
# assert pd.notna(
# row["all_validation_messages"]
# ), f"Row {idx} is marked invalid but has no all_validation_messages"

async def test_get_validation_results_no_file_handle_emits_warning_async(
self, syn_with_logger: Synapse, caplog: pytest.LogCaptureFixture
Expand Down
5 changes: 3 additions & 2 deletions tests/integration/synapseclient/models/async/test_virtualtable_async.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@

import pandas as pd
import pytest
import pytest_asyncio

from synapseclient import Synapse
from synapseclient.core.exceptions import SynapseHTTPError
Expand Down Expand Up @@ -149,12 +150,12 @@ async def test_virtual_table_lifecycle(self, project_model: Project) -> None:


class TestVirtualTableWithDataOperations:
@pytest.fixture(autouse=True, scope="function")
@pytest_asyncio.fixture(autouse=True, scope="function")
def init(self, syn: Synapse, schedule_for_cleanup: Callable[..., None]) -> None:
self.syn = syn
self.schedule_for_cleanup = schedule_for_cleanup

@pytest.fixture(scope="class")
@pytest_asyncio.fixture(scope="class")
async def base_table_with_data(
self,
project_model: Project,
Expand Down
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