Search NCBI for papers associated with private datasets#606

Merged

vagisha merged 28 commits intorelease25.11-SNAPSHOTfrom

25.11_fb_pubmed-publication-notification

Mar 17, 2026

Commits on Feb 12, 2026

- Added PubMed tracking fields to DatasetStatus table: columns to cache PubMed Id, PubMed search strategy, and user dismissal status
vagisha
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Commits on Feb 13, 2026

Added NcbiPublicationSearchService.java
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- Added enablePublicationCheck to PrivateDataReminderSettings
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- Replaced pubmedId columns with publicationId since not all article matches will have PubMed Ids.
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Commits on Feb 20, 2026

Clean up NcbiPublicationSearchService.
vagisha
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Commits on Feb 21, 2026

- Extracted PublicationMatch into a top level class
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Commits on Feb 24, 2026

Get date on publication and compare publication date with experiment create date in the sorting logic
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Commits on Feb 25, 2026

Commits on Feb 26, 2026

Commits on Feb 27, 2026

- Added searchPublicationsForDataset.jsp to replace the page rendering code in the action class
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Commits on Feb 28, 2026

Commits on Mar 2, 2026

Added unit tests.
vagisha
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Commits on Mar 3, 2026

Commits on Mar 4, 2026

Commits on Mar 7, 2026

- Added a citation column to the DatasetStatus table so that we don't have to lookup the citation for a saved publicationId.
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Commits on Mar 9, 2026

- Include the PubMedId in the make public URL included in the "found publication" message.
vagisha
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Commits on Mar 16, 2026

Addressed code review feedback
vagisha
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