Version 1.2.1

What's Changed

• Report the actual set of callers used for consensus by @bbimber in #141
• Update doublet filter defaults by @bbimber in #142
• Expand doublet filter checks by @bbimber in #143
• Improve discordant calls section by @bbimber in #144
• Update github action R and bioc versions by @bbimber in #146
• Add more QC plots by @bbimber in #147
• Add testing for dropletutils by @bbimber in #148
• Add option for minAllowableSingletRate by @bbimber in #149
• Update value for minAllowableDoubletRateFilter by @bbimber in #150
• Add dependencies by @bbimber in #151
• Update gmm-demux tests by @bbimber in #153

Full Changelog: 1.2.0...1.2.1

Version 1.2.0

The primary updates in this release are:

• Update to SeuratObject 5.x by @bbimber in #131
• Add optional check to flag/skip omit callers with abnormally high doublet rates by @bbimber in #140

Full Changelog: 1.04...1.2.0

Version 1.04

This release includes a number of improvements since the publication, including support of demuxmix.

What's Changed

• Bioc 3.15 by @bbimber in #96
• Add new option to discard callers with high disagreement from majority by @bbimber in #97
• Improve caller accuracy reporting by @bbimber in #98
• Add additional QC plot by @bbimber in #103
• Update github actions by @bbimber in #104
• Update docker github workflow by @bbimber in #106
• Switch to ubuntu 22.04 in CI by @bbimber in #107
• Update sklearn to fix gmmdemux install by @bbimber in #108
• Add option to skip tSNE plots by @bbimber in #109
• Add support for demuxmix by @bbimber in #112
• Try to revert prior numpy version now that pegasys is updated by @bbimber in #113
• Allow import of 10x data with multiple assays by @bbimber in #115
• Simplify arguments to provide h5file by @bbimber in #117
• Support filtering of HTOs during CallAndGenerateReport by @bbimber in #119
• Fully support 10x multi-assay data by @bbimber in #122

Full Changelog: 1.0.3...1.04

Version 1.0.3

This is the cellhashR version used in Boggy et al.