diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index bc6e580..e6b977d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -30,7 +30,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ["3.8", "3.9", "3.10", "3.11"] + python-version: ["3.10", "3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v5 - uses: astral-sh/setup-uv@v7 diff --git a/examples/Plugin.ipynb b/examples/Plugin.ipynb index 8f8e150..c137027 100644 --- a/examples/Plugin.ipynb +++ b/examples/Plugin.ipynb @@ -3,7 +3,7 @@ { "cell_type": "code", "execution_count": null, - "id": "74b20970", + "id": "ea68ab39", "metadata": {}, "outputs": [], "source": [ @@ -13,7 +13,7 @@ { "cell_type": "code", "execution_count": null, - "id": "4b1a1665", + "id": "22ce47f6", "metadata": {}, "outputs": [], "source": [ @@ -62,7 +62,7 @@ }, { "cell_type": "markdown", - "id": "06263c4c", + "id": "019c7c7e", "metadata": {}, "source": [ "The above config contains an unknown track type to `hg`, so we get a validation error because we don't know how to render the track!" @@ -71,7 +71,7 @@ { "cell_type": "code", "execution_count": null, - "id": "8c4a4b38", + "id": "8f5f4294", "metadata": {}, "outputs": [], "source": [ @@ -82,7 +82,7 @@ }, { "cell_type": "markdown", - "id": "d20a1b24", + "id": "5cc74c65", "metadata": {}, "source": [ "# `hg.PluginTrack`\n", @@ -93,13 +93,11 @@ { "cell_type": "code", "execution_count": null, - "id": "4d6149f1", + "id": "26813410", "metadata": {}, "outputs": [], "source": [ - "from typing import ClassVar, Union\n", - "\n", - "from typing_extensions import Literal\n", + "from typing import ClassVar, Literal\n", "\n", "\n", "class PileupTrack(hg.PluginTrack):\n", @@ -109,17 +107,17 @@ " )\n", "\n", "\n", - "hg.Viewconf[Union[PileupTrack, hg.Track]](**config) # works!" + "hg.Viewconf[PileupTrack | hg.Track](**config) # works!" ] }, { "cell_type": "markdown", - "id": "66e046ce", + "id": "ec287f3e", "metadata": {}, "source": [ "How does this work? The `hg.Viewconf` is a `pydantic.GenericModel` which is _generic_ over the track type. By default, only HiGlass's builtin track types are recognized, so `hg.Viewconf(**data)` will throw an error when a configuration contains an unknown track.\n", "\n", - "By supplying a our plugin track as a type parameter explicity, `hg.Viewconf[Union[PileupTrack, hg.Track]]`, we extend the model to recognize the `PileupTrack` in our config.\n", + "By supplying a our plugin track as a type parameter explicity, `hg.Viewconf[PileupTrack | hg.Track]`, we extend the model to recognize the `PileupTrack` in our config.\n", "\n", "This can seem a bit verbose, but supplying the type parameter explicitly is only necessary when deserializing an unknown config, e.g.\n", "\n", @@ -134,13 +132,11 @@ { "cell_type": "code", "execution_count": null, - "id": "4fde003f", + "id": "736146c8", "metadata": {}, "outputs": [], "source": [ - "from typing import ClassVar\n", - "\n", - "from typing_extensions import Literal\n", + "from typing import ClassVar, Literal\n", "\n", "import higlass as hg" ] @@ -148,7 +144,7 @@ { "cell_type": "code", "execution_count": null, - "id": "1210c425", + "id": "c178a248", "metadata": {}, "outputs": [], "source": [ @@ -166,13 +162,11 @@ { "cell_type": "code", "execution_count": null, - "id": "76a67f86", + "id": "d86e35fc", "metadata": {}, "outputs": [], "source": [ - "from typing import ClassVar\n", - "\n", - "from typing_extensions import Literal\n", + "from typing import ClassVar, Literal\n", "\n", "import higlass as hg\n", "\n", @@ -218,7 +212,7 @@ }, { "cell_type": "markdown", - "id": "bb20c39e", + "id": "0a28bebf", "metadata": {}, "source": [ "## Extending plugins with `pydantic`\n", @@ -231,12 +225,10 @@ { "cell_type": "code", "execution_count": null, - "id": "35355968", + "id": "6e397bed", "metadata": {}, "outputs": [], "source": [ - "from typing import Optional\n", - "\n", "from pydantic import BaseModel\n", "\n", "\n", @@ -252,7 +244,7 @@ "\n", "class SequenceTrack(hg.PluginTrack):\n", " type: Literal[\"horizontal-sequence\"]\n", - " data: Optional[SeqeuenceTrackData] = None\n", + " data: SeqeuenceTrackData | None = None\n", " plugin_url: ClassVar[str] = (\n", " \"https://unpkg.com/higlass-sequence/dist/higlass-sequence.js\"\n", " )\n", @@ -279,7 +271,7 @@ { "cell_type": "code", "execution_count": null, - "id": "1328f1d6", + "id": "98794dcf", "metadata": {}, "outputs": [], "source": [ @@ -289,7 +281,7 @@ { "cell_type": "code", "execution_count": null, - "id": "27f99ea4", + "id": "9776449b", "metadata": {}, "outputs": [], "source": [ @@ -298,7 +290,7 @@ }, { "cell_type": "markdown", - "id": "35965609", + "id": "93fb6b03", "metadata": {}, "source": [ "And the track is faithfully rendered by HiGlass" @@ -307,7 +299,7 @@ { "cell_type": "code", "execution_count": null, - "id": "7948b163", + "id": "aa4d7519", "metadata": {}, "outputs": [], "source": [ @@ -317,7 +309,7 @@ { "cell_type": "code", "execution_count": null, - "id": "ad082d7f", + "id": "62543d11", "metadata": {}, "outputs": [], "source": [] @@ -344,4 +336,4 @@ }, "nbformat": 4, "nbformat_minor": 5 -} +} \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index 7e8229c..9f24df5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,21 +16,19 @@ classifiers = [ "Intended Audience :: Developers", "Programming Language :: Python", "Programming Language :: Python :: 3", - 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